wgdi-WGDI的简单使用（一）

热门回复：

• 凸顶栅藻:老师您好 请问我是基于转录组的数据来做的 gff文件格式如下 一直报错 可以帮忙看一下吗 十分感谢 TRINITY_DN99920_c0_g1_i1 1 313 - 1 TRINITY_DN99920_c0_g1_i1 TRINITY_DN99924_c0_g1_i1 1 435 + 1 TRINITY_DN99924_c0_g1_i1 TRINITY_DN9992_c0_g1_i1 1 3024 - 1 TRINITY_DN9992_c0_g1_i1 TRINITY_DN9992_c0_g1_i1 1 3024 - 2 TRINITY_DN9992_c0_g1_i1 报错信息： ValueError: invalid literal for int() with base 10: '+'
• ECO-ChenYang:非常感谢孙老师手把手的教学，希望有朝一日自己也能写出漂亮的脚本[打call]
• sirius368:老师，您好，想问一下，跑icl的时候报下面这种错误，是因为我做的物种没有共线性的原因吗 谢谢老师！ Traceback (most recent call last): File "/mnt/label/home/home/yuanhao/miniconda3/lib/python3.9/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "/mnt/label/home/home/yuanhao/miniconda3/lib/python3.9/site-packages/wgdi/run_colliearity.py", line 118, in single_pool data = collinearity.run() File "/mnt/label/home/home/yuanhao/miniconda3/lib/python3.9/site-packages/wgdi/collinearity.py", line 66, in run if self.maxPath(points2): File "/mnt/label/home/home/yuanhao/miniconda3/lib/python3.9/site-packages/wgdi/collinearity.py", line 112, in maxPath self.score, self.path_index = points.loc[points.index【0】, [ File "/mnt/label/home/home/yuanhao/miniconda3/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 5039, in __getitem__ return getitem(key) IndexError: index 0 is out of bounds for axis 0 with size 0
• 小朝阳丶:老师，我在跑共线性图时出现如下报错，请问是什么原因呀，该如何解决呢，万分感谢！ Traceback (most recent call last): File "/home/liaoyang/software/anaconda3/bin/wgdi", line 10, in <module> sys.exit(main()) File "/home/liaoyang/software/anaconda3/lib/python3.8/site-packages/wgdi/run.py", line 148, in main module_to_run(arg, value) File "/home/liaoyang/software/anaconda3/lib/python3.8/site-packages/wgdi/run.py", line 110, in module_to_run run_subprogram(program, conf, name) File "/home/liaoyang/software/anaconda3/lib/python3.8/site-packages/wgdi/run.py", line 78, in run_subprogram r.run() File "/home/liaoyang/software/anaconda3/lib/python3.8/site-packages/wgdi/run_colliearity.py", line 81, in run del blast, group UnboundLocalError: local variable 'group' referenced before assignment
• 哇磕里啦:老师您好，想问一下，按照您的步骤在运行脚本2的时候出现了这样的报错。想知道是哪里出了问题，输入文件是第一个脚本输出的old.gff Traceback (most recent call last): File "../../Compared_Genome/02.gff_lens.py", line 52, in <module> lens.to_csv(sys.argv【3】, sep="\t", header=None) IndexError: list index out of range